PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g089980.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 346aa    MW: 38956.1 Da    PI: 6.4978
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g089980.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88e-05177196120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++Cp C k+F+r  n++ H+
  Csa17g089980.1 177 FSCPLCFKTFNRYNNMQMHM 196
                     89*****************9 PP

2zf-C2H213.10.0003261283123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C  Cgk F  k + ++H +++
  Csa17g089980.1 261 FACRRCGKAFAVKGDWRTHEKNC 283
                     78*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.9E-5177196IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.66177204IPR007087Zinc finger, C2H2
PROSITE patternPS000280179199IPR007087Zinc finger, C2H2
SuperFamilySSF576673.22E-6247281No hitNo description
Gene3DG3DSA:3.30.160.601.2E-5248281IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.767261281IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MSNPACSNLL DNGCDHNNIN YSTSLSYIYN SQGSFYYPNT INPSYTNPTP TTSTFPSSPP  60
LREALPLLSL SPIRHQEQQD RAYFMDTDQI SSSIFLDDPH VTVDLHLGLP NYGVGESIGS  120
YIASDATTEE QEQDHDQGVE VTVESHLHDD DDHGDLHRGH HYWIPTPSQI LIGPTQFSCP  180
LCFKTFNRYN NMQMHMWGHG SQYRKGPESL RGTQPTGMLR LPCFCCAPGC KNNIDHPRAK  240
PLKDFRTLQT HYKRKHGSRP FACRRCGKAF AVKGDWRTHE KNCGKLWYCS CGSDFKHKRS  300
LKDHVKAFGN GHVPIGIDSF GGDLEDYYEA ASDIEQQDDS NNNEC*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00197DAPTransfer from AT1G51220Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3118100.0AJ311810.2 Arabidopsis thaliana mRNA for WIP5 protein (At1g51220 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010481105.10.0PREDICTED: protein TRANSPARENT TESTA 1-like
SwissprotQ8W0310.0ZWIP5_ARATH; Zinc finger protein WIP5
TrEMBLR0IQE20.0R0IQE2_9BRAS; Uncharacterized protein
STRINGAT1G51220.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51220.10.0WIP domain protein 5